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Allen Developing Mouse Brain Reference Atlas
The Allen Developing Mouse Brain Reference Atlas was created with the expertise of Luis Puelles, M.D., Ph.D. using a systematic developmental ontology.
High resolution anatomic reference atlases have been created for seven stages of mouse brain development, and are currently available for the sagittal plane annotated through Level 05.
The Ontology Legend Browser contains a completed ontology through Level 05, with additional levels for the forebrain.
Embryonic Atlases
Select Age Theiler Stage Plane Images
E11.5 TS19 sagittal 28
E13.5 TS21 sagittal 15
E15.5 TS24 sagittal 16
E18.5 TS26 sagittal 19
 
Embryonic Reference Sets
Select Treatment Images
HP Yellow 109
HP Yellow 240
HP Yellow 286
NISSL 261
Postnatal Atlases
Select Age Plane Images Related Data
P4 sagittal 23
P14 sagittal 39
P56 sagittal 21 Adult Mouse Brain Atlas
 
Postnatal Reference Sets
Select Treatment Images
NISSL 356
NISSL 281
NISSL 365
Legend
Ontology Legend Browser
Additional Embryonic Reference Sets
Select Age Theiler Stage Plane Treatment Images
E11.5 TS19 coronal HP Yellow 287
E12.5 TS20 sagittal HP Yellow 142
E12.5 TS20 coronal HP Yellow 326
E13.5 TS21 coronal HP Yellow 371
E14.5 TS23 coronal HP Yellow 425
E14.5 TS23 sagittal HP Yellow 233
E15.5 TS24 coronal HP Yellow 391
E16.5 TS24.5 sagittal HP Yellow 267
E16.5 TS24.5 coronal HP Yellow 436
E17.5 TS25 coronal HP Yellow 509
E17.5 TS25 sagittal HP Yellow 313
E18.5 TS26 coronal NISSL 407
Additional Postnatal Reference Sets
Select Age Plane Treatment Images
P1 sagittal NISSL 303
P2 sagittal NISSL 285
P4 coronal NISSL 506
P7 sagittal NISSL 397
P14 coronal NISSL 498
P28 coronal NISSL 508
P28 sagittal NISSL 290
P56 coronal NISSL 509