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ALLEN Developing Mouse Brain Atlas

About AGEA

An interactive relational atlas based on spatial correlations of gene expression data for ~2000 genes in the Allen Developing Mouse Brain Atlas.

Place crosshairs over a point of interest and use the discovery tools to explore the genetic architecture of the brain:

  • Correlation mode: visualize the degree of transcriptome similarity between a user-specified reference point and the rest of the brain at the same age or neighboring ages
  • Use the Find Genes button to retrieve a list of genes that mark a region of interest

About the Allen Developing Mouse Brain Atlas

A detailed atlas of gene expression across mouse brain development. Key features:
  • ~2000 genes functionally relevant to brain development or disorders of the brain
  • High resolution in situ hybridization image data across four prenatal and three early postnatal timepoints
  • Age-matched anatomic reference atlases
  • Advanced search and visualization tools
  • Detailed manual annotation for all genes over four prenatal timepoints
  • Brain Explorer 3-D® viewer

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